What is circuit-theory connectivity? | Installation | Key Inputs | The resistance surface | Focal nodes | Choosing a Mode | Circuitscape: Pairwise Mode | Circuitscape: One-to-All and All-to-One Modes | Circuitscape: Advanced Mode | Additional Circuitscape Options | Per-pair current and voltage maps | Variable source strengths | Short-circuit regions | Include/exclude pairs | Omniscape: Moving-Window Connectivity | With source strength weights | Conditional connectivity | Parallel processing | Performance | Saving Outputs | Tips
Package: circuitscaper 0.1.1.9000
circuitscaper: 'Circuitscape' and 'Omniscape' Connectivity Analysis via 'Julia'
Provides an R-native interface to the 'Circuitscape.jl' and 'Omniscape.jl' 'Julia' packages for landscape connectivity modeling using circuit theory. Users work entirely in R with familiar objects (SpatRaster, file paths) while 'Julia' handles computation invisibly. Supports all four 'Circuitscape' modes (pairwise, one-to-all, all-to-one, advanced) and 'Omniscape' moving-window analysis. Methods are described in McRae (2006) <doi:10.1111/j.0014-3820.2006.tb00500.x> and Landau et al. (2021) <doi:10.21105/joss.02829>.
Authors:
circuitscaper_0.1.1.9000.tar.gz
circuitscaper_0.1.1.9000.zip(r-4.7-any)circuitscaper_0.1.1.9000.zip(r-4.6-any)circuitscaper_0.1.1.9000.zip(r-4.5-any)
circuitscaper_0.1.1.9000.tgz(r-4.6-any)circuitscaper_0.1.1.9000.tgz(r-4.5-any)
circuitscaper_0.1.1.9000.tar.gz(r-4.7-any)circuitscaper_0.1.1.9000.tar.gz(r-4.6-any)
circuitscaper_0.1.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
circuitscaper/json (API)
| # Install 'circuitscaper' in R: |
| install.packages('circuitscaper', repos = c('https://matthewkling.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/matthewkling/circuitscaper/issues
Pkgdown/docs site:https://matthewkling.github.io
Last updated from:e376291a56. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 189 | ||
| source / vignettes | OK | 239 | ||
| linux-release | OK | 183 | ||
| macos-release | OK | 169 | ||
| macos-oldrel | OK | 155 | ||
| windows-devel | OK | 193 | ||
| windows-release | OK | 131 | ||
| windows-oldrel | OK | 127 | ||
| wasm-release | OK | 120 |
Exports:cs_advancedcs_all_to_onecs_install_juliacs_julia_availablecs_one_to_allcs_pairwisecs_setupos_conditionos_run
Dependencies:evaluatehighrJuliaCallknitrRcpprjsonterraxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Advanced Circuitscape Analysis | cs_advanced |
| All-to-One Circuitscape Analysis | cs_all_to_one |
| Install Julia and Required Packages | cs_install_julia |
| Check if Julia and Required Packages Are Available | cs_julia_available |
| One-to-All Circuitscape Analysis | cs_one_to_all |
| Pairwise Circuitscape Analysis | cs_pairwise |
| Set Up Julia and Load Circuitscape/Omniscape | cs_setup |
| Define a Condition for Conditional Omniscape Connectivity | os_condition |
| Run Omniscape Moving-Window Connectivity Analysis | os_run |